r.compress - GRASS GIS manual

NAME

r.compress - Compresses and decompresses raster maps.

KEYWORDS

raster, map management, compression

SYNOPSIS

r.compress

r.compress --help

r.compress [-upg] map=name[,name,...] [--help] [--verbose] [--quiet] [--ui]

Flags:

-u: Uncompress the map
-p: Print compression information and data type of input map(s)
-g: Print compression information in shell script style
--help: Print usage summary
--verbose: Verbose module output
--quiet: Quiet module output
--ui: Force launching GUI dialog

Parameters:

map=name[,name,...] [required]: Name of existing raster map(s)

DESCRIPTION
NOTES
EXAMPLES
SEE ALSO
AUTHORS

DESCRIPTION

r.compress can be used to compress or decompress raster maps. Additionally, it prints information about the compression method and data type of the input raster map(s).

All raster maps (those imported for the first time and those newly generated) are compressed by default using the ZSTD compression method if available, otherwise ZLIB compression is used (see below). Related no data files (i.e.: NULL files), if present, are compressed by default unless a specific environment variable is set to explicitly disable NULL file compression (GRASS_COMPRESS_NULLS, see below).

During compression or re-compression, r.compress compresses raster maps using the method specified by means of the environment variable GRASS_COMPRESSOR. The default compression method is ZSTD if available, otherwise ZLIB's "deflate" algorithm (LZ77-based). Raster maps that contain very little information (such as boundary, geology, soils and land use maps) can be greatly reduced in size. Some raster maps are shrunk to roughly 1% of their original sizes. All newly generated raster maps are automatically stored as compressed data with varying methods depending on the raster format (i.e., CELL: integer; FCELL: single precision; DCELL: double precision; see below). All GRASS GIS modules are able to read both compressed and uncompressed raster maps.

Raster maps that are already compressed might be compressed again, either by setting a different method with GRASS_COMPRESSOR (supported methods: RLE, ZLIB, LZ4, BZIP2, ZSTD) or, for the case of ZLIB compression, by changing the compression level with the environment variable GRASS_ZLIB_LEVEL.

Compressed raster maps may be decompressed using r.compress with the -u flag. If a raster map was already decompressed and the -u flag is set, the module simply informs the user that the map is already decompressed and exits.

Information about the compression method and data type of the input raster map(s) can be printed in shell style with the -g flag. In this case, the module prints to stdout one line per input map with the fields "input map name", "data type", "name of data compression method", "NULL file compression" separated by the pipe character. NULL file compression is indicated with "YES" or "NO".

TERMINOLOGY

INTEGER map (CELL data type): a raster map of INTEGER type (whole numbers only)
FLOAT map (FCELL data type): a raster map of FLOAT type (4 bytes, 7-9 digits precision)
DOUBLE map (DCELL data type): a raster map of DOUBLE type (8 bytes, 15-17 digits precision)
NULL: represents "no data" in raster maps; to be distinguished from 0 (zero) data value

OVERVIEW OF AVAILABLE COMPRESSION ALGORITHMS

The following compression methods are available (set by export GRASS_COMPRESSOR=method):

NONE (uncompressed)
RLE (generic Run-Length Encoding of single bytes; deprecated)
ZLIB (DEFLATE, good speed and compression)
- with zlib compression levels (export GRASS_ZLIB_LEVEL=X): -1..9 (-1 is default which corresponds to ZLIB level 6)
- note: export GRASS_ZLIB_LEVEL=0 is equal to copying the data as-is from source to destination
LZ4 (fastest, low compression)
BZIP2 (slowest, high compression)
ZSTD (compared to ZLIB, faster and higher compression, much faster decompression - default compression)

Important: the NULL file compression can be turned off with export GRASS_COMPRESS_NULLS=0. Raster maps with NULL file compression can only be opened with GRASS GIS 7.2.0 or later. NULL file compression for a particular raster map can be managed with r.null -z. The NULL file compression is using the LZ4 method as being the best compromise between speed and compression rate.

COMPRESSION ALGORITHM DETAILS

All GRASS GIS raster map types are by default ZSTD compressed if available, otherwise ZLIB compressed. Through the environment variable GRASS_COMPRESSOR the compression method can be set to RLE, ZLIB, LZ4, BZIP2, or ZSTD.

Integer (CELL type) raster maps can be compressed with RLE if the environment variable GRASS_COMPRESSOR exists and is set to RLE. However, this is not recommended.

Floating point (FCELL, DCELL) raster maps never use RLE compression; they are either compressed with ZLIB, LZ4, BZIP2, ZSTD or are uncompressed.

RLE: DEPRECATED Run-Length Encoding, poor compression ratio but fast. It is kept for backwards compatibility to read raster maps created with GRASS 6. It is only used for raster maps of type CELL. FCELL and DCELL maps are never and have never been compressed with RLE.
ZLIB: ZLIB's deflate is the default compression method for all raster maps, if ZSTD is not available. GRASS GIS 7 uses by default 1 as ZLIB compression level which is the best compromise between speed and compression ratio, also when compared to other available compression methods. Valid levels are in the range [1, 9] and can be set with the environment variable GRASS_ZLIB_LEVEL.
LZ4: LZ4 is a very fast compression method, about as fast as no compression. Decompression is also very fast. The compression ratio is generally higher than for RLE but worse than for ZLIB. LZ4 is recommended if disk space is not a limiting factor.
BZIP2: BZIP2 can provide compression ratios much higher than the other methods, but only for large raster maps (> 10000 columns). For large raster maps, disk space consumption can be reduced by 30 - 50% when using BZIP2 instead of ZLIB's deflate. BZIP2 is the slowest compression and decompression method. However, if reading from / writing to a storage device is the limiting factor, BZIP2 compression can speed up raster map processing. Be aware that for smaller raster maps, BZIP2 compression ratio can be worse than other compression methods.
ZSTD: ZSTD (Zstandard) provides compression ratios higher than ZLIB but lower than BZIP2 (for large data). ZSTD compresses up to 4x faster than ZLIB, and usually decompresses 6x faster than ZLIB. ZSTD is the default compression method if available.

NOTES

Compression method number scheme

The used compression method is encoded with numbers. In the internal cellhd file, the value for "compressed" is 1 for RLE, 2 for ZLIB, 3 for LZ4, 4 for BZIP2, and 5 for ZSTD.

Obviously, decompression is controlled by the raster map's compression, not by the environment variable.

Formats

Conceptually, a raster data file consists of rows of cells, with each row containing the same number of cells. A cell consists of one or more bytes. For CELL maps, the number of bytes per cell depends on the category values stored in the cell. Category values in the range 0-255 require 1 byte per cell, while category values in the range 256-65535 require 2 bytes, and category values in the range above 65535 require 3 (or more) bytes per cell.

FCELL maps always have 4 bytes per cell and DCELL maps always have 8 bytes per cell.

Since GRASS GIS 7.0.0, the default compression method for Integer (CELL) raster maps is ZLIB and no longer RLE.

ZLIB compression levels

If the environment variable GRASS_ZLIB_LEVEL exists and its value can be parsed as an integer, it determines the compression level used when newly generated raster maps are compressed using ZLIB compression. This applies to all raster map types (CELL, FCELL, DCELL).

If the variable does not exist, or the value cannot be parsed as an integer, ZLIB's compression level 1 will be used.

EXAMPLES

Printing of current compression state

Example for an uncompressed raster map:

r.compress compressed_no -p
  <compressed_no> (method 0: NONE). Data type: <CELL>

Applying ZLIB compression

Applying ZLIB compression to a copy of the uncompressed map from above:

# compression of map using ZLIB compression
g.copy raster=compressed_no,compressed_ZLIB

export GRASS_COMPRESSOR=ZLIB # ZLIB
r.compress compressed_ZLIB
r.compress compressed_ZLIB -p
  <compressed_ZLIB> is compressed (method 2: ZLIB). Data type: <CELL>
unset GRASS_COMPRESSOR # switch back to default

Applying BZIP2 compression

Applying BZIP2 compression to a copy of the ZLIB-compressed map from above:

# compression of map using BZIP2 compression
g.copy raster=compressed_ZLIB,compressed_BZIP2

export GRASS_COMPRESSOR=BZIP2 # BZIP2
r.compress compressed_BZIP2
r.compress compressed_BZIP2 -p
  <compressed_BZIP2> is compressed (method 4: BZIP2). Data type: <CELL>
unset GRASS_COMPRESSOR # switch back to default

Applying ZSTD compression

Applying ZSTD compression to a copy of the BZIP2-compressed map from above:

# compression of map using ZSTD compression
g.copy raster=compressed_BZIP2,compressed_ZSTD

export GRASS_COMPRESSOR=ZSTD # ZSTD
r.compress compressed_ZSTD
r.compress compressed_ZSTD -p
  <compressed_ZSTD> is compressed (method 5: ZSTD). Data type: <CELL>
unset GRASS_COMPRESSOR

AUTHORS

James Westervelt and Michael Shapiro, U.S. Army Construction Engineering Research Laboratory

Markus Metz

SOURCE CODE

Available at: r.compress source code (history)

Latest change: Sunday Aug 22 23:13:05 2021 in commit: ebe781938b42bde85329f51b4d66b7fb6eb4e84b